Downloads

• ATHENA: A method for integrating genome-wide gene expression and genotype data to generate meta-dimensional prediction models in CAP, Emily Holzinger
• Polygenic Prediction of complex phenotypes and drug response, Hae Kyung Im
• Polygenic Inheritance of Paclitaxel-Induced Peripheral Neuropathy Driven by Axon Outgrowth Gene Sets, Aparna Chhibber
• A Study of Asthma Pharmacogenomics Using RNA-Seq, Blanca Himes
• Integration of cell line and clinical trial genome-wide analyses implicates multiple loci in paclitaxel-induced peripheral neuropathy, Heather Wheeler
• Continuing challenges in analysis of RNA-seq data, Courtney French
• PGRN RNA-seq Pilot Analysis, Xiang Qin
• Polygenic modeling, and genetic associations with response, Matthew Stephens

Hotel Information

Omni Hotel in Downtown Austin
700 San Jacinto at 8th Street
Austin, Texas 78701
Phone: (512) 476-3700, Fax: (512) 397-4888

Attendees can reserve a room online at the Omni Hotels site, or call the hotel at 1-800-THE-OMNI (1-800-843-6664) and reference the meeting name 'P-STAR Analysis Workshop.'  The rooms are part of a special block available for $164 per night for December 3-5.  Any rooms not reserved by November 12, 2012 will be released for general sale after this date.

OMNI hotels has a free loyalty program. It provides free wifi and other complimentary perks.

Invited Guest Lecturer

Statistical methods for association testing with multiple outcomes and (pharmacological) responses

Matthew Stephens, Ph.D.
Professor, Department of Human Genetics and Department of Statistics
The University of Chicago
Stephens Lab

Meeting Room and Agenda

The meeting will take place in the Lonestar Room.

Schedule (PDF version)

Datasets

• Memorandum of Understanding for Mayo Dataset
• Mayo Dataset Description
• Memorandum of Understanding for BWH PHAT-PGRN Asthma Dataset
• BWH PHAT-PGRN Asthma Dataset Description
• Memorandum of Understanding for PARC CAP Simvastatin Dataset
• PARC CAP Simvastatin Dataset Description

Note: The Memorandum of Understanding requires the signature of an institutional official.

Workshop Handout

This packet will also be given at registration at the event.

Information

The theme for this workshop is “Next-generation Analysis in Pharmacogenomics”. We will have an invited presentation by Matthew Stephens from the University of Chicago as well as a series of presentations from selected abstracts. Topics for abstracts include:

• Integrative data analysis
• GWAS and sequence analysis methods
• Polygenic modeling
• Other research in progress

Also, the 3 datasets from last year’s workshop are still available – 2 of them including RNA-seq data as well. If you are interested in accessing those data, please contact Marylyn Ritchie and Suzy Unger.

Abstracts should be less than 1 page in length and are due to P-STAR (suzy.unger@psu.edu) by October 1, 2012. Decisions regarding oral presentations will be made and announced by email on October 15, 2012. We would like all groups to present, so it would be great to have at least one abstract from each PGRN III site.