P-STAR Analysis Workshop
December 10-11, 2013
Location:
Nashville, TN
Hotel Information
Hilton Nashville Downtown
121 Fourth Avenue South
Nashville, TN 37201
Phone: (615) 620-1000, Fax: (615) 620-2050
info@nashvillehilton.com
Google map
The workshop Rooming block is now closed. Please call the hotel directly at the number above to make any further reservations or changes.
RegistrationRegistration for this event is now closed. If you have questions or are interested in attending, please contact Suzy Unger ( suzy.unger@psu.edu )
AbstractsAbstracts should be less than 1 page in length, and in the format of this template and are due to P-STAR (suzy.unger@psu.edu) by October 1, 2013. Decisions regarding oral presentations will be made and announced by email on October 15, 2013.
Invited Guest LecturerThe Apparent Contribution of Genetic Variants to Disease Depends on the Ruler
John Witte, PhD
P-STAR Consultant
UC San Francisco
Professor of Epidemiology and Biostatistics
Associate Director of Institute for Human Genetics
P-STAR
Workshop Agenda - December 10th
& 11th,
2013
PDF version
Last
updated:
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8:00 - 9:00 am |
Registration and Breakfast |
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9:00 - 9:30 am |
Welcome and Introductions |
Marylyn Ritchie, P-STAR |
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9:30 - 10:00 am |
Application of genetic risk scores across different types of datasets |
Jonathan Haines, Affiliate |
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10:00 - 10:30 am |
PolyOmic Prediction of Complex Traits: OmicKriging |
Heather Wheeler, PAAR |
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10:30 - 10:45 am |
Break |
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10:45 - 11:15 am |
A Powerful and Robust System Identification Approach to Testing Genotype-Phenotype Associations |
Guolian Kang, Affiliate |
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11:15 - 11:45 am |
A Phenome-Wide Association Study of ADME Core Variants in an EMR-linked Biobank |
Matthew Oetjens, PAT |
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11:45 - 12:15 pm |
An integrated analysis of genome-wide genetic factors underlying chemotherapeutic-induced cytotoxicity in European and African populations |
Ruowang Li, P-STAR |
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12:15 - 1:30 pm |
Lunch/Discussion |
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1:30 - 2:30 pm |
The Apparent Contribution of Genetic Variants to Disease Depends on the Ruler |
John Witte, P-STAR Invited Keynote Speaker |
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2:30 - 3:00 pm |
Genomic Determination Index |
Cheng Cheng, P-STAR |
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3:00 - 3:30 pm |
Integrative polygenic modeling reveals common genetic architecture of neuropathy resulting from distinct environmental exposures |
Heather Wheeler, PAAR |
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3:30 - 3:45 pm |
Break |
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3:45 - 4:15 pm |
An exploration of multiple traits within the AIDS Clinical Trial Group (ACTG) Using A Phenome-Wide Association Study (PheWAS) |
Sarah Pendergrass & Anurag Verma, P-STAR |
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4:15 - 4:30 pm |
Discussion |
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4:30 – 6:00 pm |
Free Time |
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6:00 pm |
Meet your group to head to dinner (Each group can set their own time if desired) |
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Wednesday, December 11th |
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|
8:00 - 9:00 am |
Breakfast |
|
|
9:00 - 9:30 am |
An R Package that Automatically Collects and Archives Details for Reproducible Computing |
Stan Pounds, Affiliate |
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9:30 - 10:00 am |
Consensus Genotyping of Targeted Sequencing Data |
Vassily Trubetskoy, PGRN Phase II |
|
10:00 - 10:30 am |
Analysis of DNA Methylation Array Data |
Brooke Fridley, P-STAR |
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10:30 - 10:45 |
Break |
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10:45 - 11:15 am |
The Effect of Vitamin D on the Airway Smooth Muscle Cell Transcriptome of Fatal Asthma Patients |
Blanca Himes, PHAT |
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11:15 - 11:45 am |
Open Discussion |
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11:45 - 1:30 pm |
Lunch/Discussion/Departures |
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Topic Color Key |
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Genome-wide association Approaches |
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Data Integration Approaches |
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PheWAS Applications |
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Computational Approaches |
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Other 'Omics Approaches |
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The PGRN analysis workshop has had enormous success over the past several years. Participation has been between 50-100 individuals from 10-13 PGRN sites and several affiliate members. The goal is to submit a collaborative manuscript summarizing the important topics of the meeting. P-STAR will organize the collection of information and writing of this yearly manuscript.
A network resource for coordination of statistical analysis and methods development in the PGRN.